STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG85693.1Flp pilus assembly protein TadD, contains TPR repeats. (242 aa)    
Predicted Functional Partners:
SDG85620.1
Type II secretion system protein F (GspF).
 
  
 0.974
SDG85477.1
Pilus assembly protein CpaB.
 
  
 0.959
SDG85546.1
Pilus assembly protein CpaE.
 
  
 0.957
SDG85658.1
Type II secretion system protein F (GspF).
 
  
 0.957
SDG85918.1
Uncharacterized membrane protein.
 
  
 0.932
SDG85509.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.928
SDG85730.1
Protein of unknown function.
  
    0.906
SDG85583.1
Pilus assembly protein CpaF.
 
  
 0.874
SDG85842.1
TadE-like protein.
 
  
 0.827
SDH92783.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 
 0.805
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.