STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG88101.1Sugar phosphate permease. (432 aa)    
Predicted Functional Partners:
rhmD
L-rhamnonate dehydratase; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
  
  
 0.698
SDG88040.1
2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.693
SDG88140.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.533
SDH40247.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
  
  
 0.511
SDH94538.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
     
 0.456
SDH67986.1
MFS transporter, FHS family, L-fucose permease.
   
    0.430
SDH96939.1
MFS transporter, FHS family, L-fucose permease.
   
    0.430
SDH90897.1
MFS transporter, ACS family, glucarate transporter.
  
     0.413
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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