STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG89768.1Outer membrane autotransporter barrel domain-containing protein. (886 aa)    
Predicted Functional Partners:
SDI17558.1
Outer membrane autotransporter barrel domain-containing protein.
  
   
 0.773
SDG80786.1
HDOD domain-containing protein.
  
     0.659
SDH44704.1
Putative porin.
  
     0.631
SDJ45780.1
Hypothetical protein.
  
     0.628
SDH80561.1
C-terminal novel E3 ligase, LRR-interacting.
  
     0.623
SDJ45700.1
Hypothetical protein.
  
     0.609
SDI61120.1
UvrD/REP helicase N-terminal domain-containing protein.
  
     0.597
SDH03797.1
Protein of unknown function.
  
     0.584
SDG85693.1
Flp pilus assembly protein TadD, contains TPR repeats.
  
    0.572
SDJ45733.1
Hypothetical protein.
  
     0.564
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.