STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG75447.1Transcriptional regulator, TetR family. (204 aa)    
Predicted Functional Partners:
SDG75404.1
Poly(hydroxyalkanoate) granule-associated protein.
  
     0.715
SDG75365.1
Poly(hydroxyalkanoate) granule-associated protein.
  
     0.690
SDH07255.1
Coniferyl-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.652
SDH07345.1
Choline dehydrogenase.
 
 
 0.563
SDH07299.1
Hypothetical protein.
 
  
 0.529
SDH09680.1
Uncharacterized membrane protein YGL010W.
  
     0.525
SDH65114.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.495
SDG27973.1
START domain-containing protein.
  
     0.480
SDH66111.1
START domain-containing protein.
  
     0.477
SDG75487.1
Polyhydroxyalkanoate synthase.
       0.472
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.