STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG76498.1General secretion pathway protein D. (633 aa)    
Predicted Functional Partners:
SDG76464.1
Type IV pilus biogenesis.
  
 
 0.991
SDG76594.1
General secretion pathway protein G.
  
 0.972
SDG76565.1
General secretion pathway protein F.
 
  
 0.960
SDG76672.1
General secretion pathway protein J.
 
  
 0.960
SDG76696.1
Type II secretion system protein K (GspK).
 
   
 0.956
SDG76644.1
General secretion pathway protein I.
 
  
 0.946
SDG65178.1
Type III secretion protein R.
  
 
 0.945
SDG76536.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.945
SDG27213.1
Type III secretion apparatus lipoprotein, YscJ/HrcJ family.
  
 
 0.935
SDG65212.1
Type III secretion protein S.
  
 
 0.935
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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