STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH01974.1Transcriptional regulator, GntR family. (244 aa)    
Predicted Functional Partners:
SDG52062.1
Transcriptional regulator, GntR family.
  
    0.756
SDG26328.1
Transcriptional regulator, GntR family.
  
    0.755
SDH11777.1
Transcriptional regulator, GntR family.
  
    0.691
SDG20600.1
Hypothetical protein.
    
  0.601
SDG54200.1
Hypothetical protein.
    
  0.601
SDG10190.1
Vanillate O-demethylase ferredoxin subunit.
    
  0.597
SDH02680.1
Ferredoxin-NADP reductase.
    
  0.597
SDG28326.1
Transcriptional regulator, GntR family.
  
    0.515
SDI03572.1
CDP-4-dehydro-6-deoxyglucose reductase.
    
  0.485
SDI30810.1
NAD(P)H-flavin reductase.
    
  0.485
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.