STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH02321.1Sarcosine oxidase subunit delta. (104 aa)    
Predicted Functional Partners:
SDH02252.1
Sarcosine oxidase subunit gamma.
 
 0.999
SDH02283.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 0.999
SDH02353.1
Sarcosine oxidase subunit beta.
 
 0.999
SDH02923.1
Hypothetical protein.
 
 0.985
SDH81260.1
Aminomethyltransferase.
  
 0.957
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.957
SDH02710.1
Rieske 2Fe-2S family protein.
 
    0.933
SDH02961.1
Hypothetical protein.
 
    0.926
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
  
    0.907
SDH02996.1
Membrane dipeptidase.
 
    0.904
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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