STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG97829.1Outer membrane lipase/esterase. (646 aa)    
Predicted Functional Partners:
SDH81594.1
Hemoglobin/transferrin/lactoferrin receptor protein.
  
 
 
 0.927
SDJ23767.1
c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains.
  
     0.683
SDI33739.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.678
SDG75404.1
Poly(hydroxyalkanoate) granule-associated protein.
  
     0.672
SDH74905.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
   0.652
SDG22279.1
OmpA-OmpF porin, OOP family.
 
 
 
 0.651
SDG76205.1
Type II secretion system protein A.
  
     0.636
SDI73683.1
Surface adhesion protein.
  
  
 0.631
SDG30151.1
Curlin associated repeat-containing protein.
 
 
 0.624
SDI86652.1
Hypothetical protein.
  
 
 0.616
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.