STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG99685.1Transcriptional regulator, DeoR family. (254 aa)    
Predicted Functional Partners:
SDI43452.1
PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
 
  
 0.919
SDI43486.1
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.913
SDG99757.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
    0.721
SDG99720.1
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.668
SDH82565.1
PTS IIA-like nitrogen-regulatory protein PtsN.
 
  
 0.635
SDI43524.1
Phosphocarrier protein HPr; Belongs to the PEP-utilizing enzyme family.
 
  
 0.631
kdgT
2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.
       0.619
SDG99648.1
Polyphosphate kinase 2, PA0141 family.
       0.498
SDH48057.1
Homodimeric glycerol 3-phosphate dehydrogenase (quinone); Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.477
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
   
 
  0.440
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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