STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slyXSlyX protein; Belongs to the SlyX family. (68 aa)    
Predicted Functional Partners:
SDH24207.1
Diadenosine tetraphosphate (Ap4A) hydrolase.
 
    0.927
SDI09747.1
SMI1-KNR4 cell-wall.
  
     0.557
SDH19286.1
Hypothetical protein.
  
     0.544
SDG79890.1
Glycerol-3-phosphate dehydrogenase.
  
     0.506
SDH78460.1
Hypothetical protein.
  
     0.484
SDH80777.1
Nucleoid-associated protein.
  
   
 0.476
SDH66342.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
  
     0.469
SDG62678.1
Acetyltransferase (GNAT) family protein.
  
     0.459
SDI05026.1
Hypothetical protein.
  
     0.454
SDH65032.1
Protein of unknown function.
  
     0.449
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.