STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH25597.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
SDH25551.1
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 
     0.623
SDH29726.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.500
SDH25513.1
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
 
     0.498
SDH91708.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.464
SDI02514.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.464
SDH93076.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.454
SDI33653.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.450
SDH57051.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.438
SDJ35870.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.436
SDG79959.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.434
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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