STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH20026.1Transcriptional regulator, GntR family. (239 aa)    
Predicted Functional Partners:
SDG23885.1
Transcriptional regulator, GntR family.
  
     0.732
SDH20174.1
Putative spermidine/putrescine transport system permease protein.
 
    0.703
SDH20060.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
   
 0.700
SDH20098.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
 
     0.682
SDH20134.1
Putative spermidine/putrescine transport system permease protein.
 
     0.648
SDG74383.1
Transcriptional regulator, GntR family.
  
     0.619
SDH67598.1
GntR family transcriptional regulator, histidine utilization repressor.
  
     0.586
SDH19907.1
Hypothetical protein.
       0.504
proC-2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.504
SDH19992.1
Transcriptional regulator, TetR family.
       0.504
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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