STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH40336.1Protein of unknown function. (200 aa)    
Predicted Functional Partners:
SDI87552.1
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
    0.803
SDI04644.1
Regulator of RpoD, Rsd/AlgQ; Belongs to the Rsd/AlgQ family.
  
     0.748
SDI87335.1
Hypothetical protein.
  
     0.706
SDG98994.1
Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation.
   
  
 0.659
SDG80238.1
Hypothetical protein.
  
     0.651
SDI87631.1
Cytochrome c oxidase assembly protein subunit 11.
  
    0.617
sprT
SprT protein; Belongs to the SprT family.
       0.497
SDH41090.1
Cell filamentation protein.
  
    0.493
SDI87517.1
Hypothetical protein.
  
     0.482
SDG06617.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.477
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.