STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH42683.1Regulatory protein, luxR family. (68 aa)    
Predicted Functional Partners:
SDI45766.1
Acetyltransferase (GNAT) domain-containing protein.
  
 
 0.914
SDH39334.1
Multi-sensor hybrid histidine kinase.
     
 0.826
SDG63892.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 
 0.732
SDG65443.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 
 0.713
SDG08548.1
Glyoxylase, beta-lactamase superfamily II.
    
   0.645
SDG24842.1
Quinoprotein relay system zinc metallohydrolase 1.
    
   0.645
SDG26684.1
Glyoxylase, beta-lactamase superfamily II.
    
   0.645
SDG30413.1
Glyoxylase, beta-lactamase superfamily II.
    
   0.645
SDG47387.1
Glyoxylase, beta-lactamase superfamily II.
    
   0.645
SDH76818.1
Glyoxylase, beta-lactamase superfamily II.
    
   0.645
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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