STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH42769.1Ketosteroid isomerase homolog. (148 aa)    
Predicted Functional Partners:
SDH42815.1
Uncharacterized conserved protein.
 
     0.893
SDH42730.1
PhnB protein.
 
     0.764
SDH42864.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.735
SDG20600.1
Hypothetical protein.
    
  0.708
SDG54200.1
Hypothetical protein.
    
  0.708
SDG10190.1
Vanillate O-demethylase ferredoxin subunit.
    
  0.702
SDH02680.1
Ferredoxin-NADP reductase.
    
  0.702
SDI76469.1
YD repeat-containing protein.
  
     0.492
SDJ51180.1
RHS repeat-associated core domain-containing protein.
  
     0.486
SDH80509.1
Ketosteroid isomerase-related protein.
 
  
 0.431
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.