STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH44524.1Pimeloyl-ACP methyl ester carboxylesterase. (260 aa)    
Predicted Functional Partners:
SDG07739.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 0.958
SDH11949.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
 
 
 0.918
SDH63268.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
    
  0.775
SDG63583.1
4-carboxymuconolactone decarboxylase.
 
 
 0.773
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
  0.771
SDG26475.1
4-carboxymuconolactone decarboxylase.
   
 0.739
SDI32086.1
Glutaconate CoA-transferase subunit B.
  
 
 0.716
SDI32046.1
Glutaconate CoA-transferase subunit A.
  
 
 0.708
SDI32205.1
3-oxoadipate enol-lactonase.
  
  
 
0.708
SDH76925.1
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.689
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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