STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH38002.1Long-chain fatty acid transport protein. (432 aa)    
Predicted Functional Partners:
SDH37956.1
Hypothetical protein.
  
    0.562
SDG07739.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
  
 0.528
SDG77328.1
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
  
  
 0.445
SDG80034.1
Outer membrane protein.
  
   
 0.443
SDH44833.1
Long-chain acyl-CoA synthetase.
  
  
 0.438
fadB
Short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.434
SDI19681.1
Short chain enoyl-CoA hydratase.
  
  
 0.434
SDG22279.1
OmpA-OmpF porin, OOP family.
      
 0.408
SDH81594.1
Hemoglobin/transferrin/lactoferrin receptor protein.
  
   
 0.405
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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