STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH61515.1Amino acid ABC transporter substrate-binding protein, PAAT family. (285 aa)    
Predicted Functional Partners:
SDH61590.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
  0.974
SDH61550.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
  0.971
SDH61625.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
  0.873
SDH92783.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.764
SDI46350.1
Amino acid ABC transporter membrane protein, PAAT family /amino acid ABC transporter ATP-binding protein, PAAT family.
 
 0.737
SDH36663.1
Chorismate mutase.
     
 0.704
SDH39334.1
Multi-sensor hybrid histidine kinase.
    
 0.696
SDH21652.1
Na+/proline symporter.
  
 0.672
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
    
 0.664
SDG15346.1
PAS/PAC sensor hybrid histidine kinase.
   
 0.643
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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