STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH67492.1Amino acid ABC transporter membrane protein 1, PAAT family. (219 aa)    
Predicted Functional Partners:
SDH08766.1
L-cystine-binding protein.
 
  0.983
SDH67564.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
  0.975
SDH67456.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
  0.925
SDI22330.1
Polar amino acid transport system ATP-binding protein.
  
  0.913
SDG26218.1
Polar amino acid transport system ATP-binding protein.
 
  0.908
SDG28847.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
  0.908
SDG45344.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
  0.905
SDH11560.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
  0.905
SDH08845.1
L-cystine ABC transporter ATP-binding protein.
 
  0.904
SDH04875.1
General L-amino acid transport system ATP-binding protein.
 
  0.903
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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