STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH77959.1Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (340 aa)    
Predicted Functional Partners:
SDG76236.1
Glutamate synthase (NADPH) large subunit.
  
 0.999
SDI35742.1
Glutamate synthase (NADPH) large subunit; Belongs to the glutamate synthase family.
  
 0.984
pdhA
Pyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
 
 
 0.968
SDH78036.1
Pyruvate dehydrogenase E1 component beta subunit.
 
 
 0.952
SDI25128.1
2,4-dienoyl-CoA reductase.
  
 0.926
SDG78035.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.910
SDG76271.1
Glutamate synthase (NADPH) small subunit.
  
 0.906
SDI23445.1
Isocitrate dehydrogenase (NADP).
   
 0.898
SDG07739.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.891
SDH78073.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
 
 
 0.871
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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