STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH80777.1Nucleoid-associated protein. (333 aa)    
Predicted Functional Partners:
SDH80736.1
Glutaredoxin.
       0.808
SDH65201.1
Phosphohistidine phosphatase, SixA.
 
     0.667
SDH75911.1
Uncharacterized lipoprotein.
  
     0.666
SDI99230.1
Adenylate cyclase.
  
   
 0.651
SDI31739.1
H-NS family protein MvaT.
  
     0.631
SDH27028.1
Hypothetical protein.
 
     0.615
SDI34548.1
Antitoxin CptB.
  
     0.603
SDJ35197.1
H-NS family protein MvaT.
  
     0.580
SDJ27549.1
H-NS family protein MvaT.
  
     0.576
SDH26175.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.569
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.