STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH83014.1Phospholipid transport system transporter-binding protein. (101 aa)    
Predicted Functional Partners:
SDH82974.1
Phospholipid transport system substrate-binding protein.
 
 
 0.988
SDH82933.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  
 0.967
SDH82862.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
  
 0.960
SDH82896.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
  
 0.935
SDI88945.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
  
 0.846
SDI88907.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  
 0.806
lptC
Lipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
 
   
 0.779
SDI93551.1
Hypothetical protein.
  
     0.757
SDG79516.1
GlcNAc-PI de-N-acetylase.
  
     0.751
SDI88982.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
  
 0.751
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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