STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH92592.1Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family. (234 aa)    
Predicted Functional Partners:
SDG76236.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.866
SDG81954.1
Uncharacterized conserved protein, DUF2126 family.
    
  0.732
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
     
 0.693
SDH82824.1
Arabinose-5-phosphate isomerase.
    
  0.627
SDH92534.1
Ribosome-dependent ATPase.
   
   0.602
SDI35742.1
Glutamate synthase (NADPH) large subunit; Belongs to the glutamate synthase family.
  
 
 0.584
SDH92502.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.561
SDH92560.1
ABC-2 type transport system permease protein.
       0.561
SDH92472.1
Osmotically-inducible protein OsmY, contains BON domain.
       0.547
SDG21629.1
Inactive transglutaminase fused to 7 transmembrane helices.
    
  0.479
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.