STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH92853.1Circadian clock protein KaiC. (484 aa)    
Predicted Functional Partners:
SDG63730.1
Bacteriophytochrome (light-regulated signal transduction histidine kinase).
 
 
 
 0.910
SDI64675.1
Bacteriophytochrome (light-regulated signal transduction histidine kinase).
 
 
 
 0.906
SDH92812.1
Hypothetical protein.
       0.808
SDG29208.1
Signal transduction histidine kinase.
    
 
 0.689
SDG55178.1
PAS domain S-box-containing protein.
    
 
 0.689
SDH64661.1
Osmosensitive K+ channel signal transduction histidine kinase.
    
 
 0.689
SDI78726.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 
 0.689
SDH92891.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
     0.678
SDH92783.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
  
 0.516
SDG11520.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
    0.400
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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