STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH89416.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
SDG14881.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.711
SDG11364.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.708
SDJ15796.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.677
SDG05506.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.635
SDH21090.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.628
SDH68173.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.618
SDJ15587.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.569
SDG54036.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.558
SDG58654.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.509
SDI02514.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.509
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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