STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH95378.1Gluconate permease GntT. (450 aa)    
Predicted Functional Partners:
SDH95336.1
Gluconate kinase, SKI family.
 
 
 0.824
SDI12003.1
gluconate:H+ symporter, GntP family.
  
     0.751
SDG41273.1
6-phosphogluconate dehydrogenase (decarboxylating).
 
  
 0.443
SDH57209.1
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
  
  
 0.424
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.