STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH96107.1Itaconate CoA-transferase; Belongs to the CoA-transferase III family. (399 aa)    
Predicted Functional Partners:
SDG07739.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
   
 0.858
SDH96062.1
(S)-citramalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.855
SDH96243.1
itaconyl-CoA hydratase / mesaconyl-C4 CoA hydratase.
 
 
 0.805
SDH77816.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.778
SDH96204.1
acyl-CoA dehydrogenase.
 
 
  0.763
SDH96152.1
2-methylcitrate dehydratase PrpD.
 
 
  0.743
SDG58117.1
Indolepyruvate ferredoxin oxidoreductase.
    
 0.579
SDG62980.1
Indolepyruvate ferredoxin oxidoreductase.
    
 0.579
SDH93433.1
hydroxymethylglutaryl-CoA lyase.
  
  0.557
SDJ01059.1
hydroxymethylglutaryl-CoA lyase.
  
  0.551
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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