STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH96365.1Cupin domain protein. (178 aa)    
Predicted Functional Partners:
SDH96326.1
Mannose-6-phosphate isomerase, cupin superfamily.
  
  0.569
SDI52931.1
Response regulator receiver domain-containing protein.
    
   0.554
SDI29522.1
CxxC motif-containing protein, DUF1111 family.
   
    0.533
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.527
SDH96405.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.525
SDG07739.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
     
 0.514
SDH96451.1
Transcriptional regulator, XRE family with cupin sensor.
  
 0.514
SDH89850.1
Transcriptional regulator, XRE family with cupin sensor.
  
 0.514
SDI06317.1
Transcriptional regulator, XRE family with cupin sensor.
  
 0.514
SDG28289.1
Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family.
 
  
 0.501
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.