STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH89098.1MFS transporter, MHS family, citrate/tricarballylate:H+ symporter. (433 aa)    
Predicted Functional Partners:
SDH89047.1
Molybdate transport system substrate-binding protein.
 
     0.763
SDH94538.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
   
 
 0.711
SDG07739.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.710
SDH28580.1
Homoserine dehydrogenase.
    
  0.631
rpmE2
LSU ribosomal protein L31P.
   
    0.514
rpmE
LSU ribosomal protein L31P; Binds the 23S rRNA.
   
    0.499
SDH61883.1
MFS transporter, putative metabolite:H+ symporter.
  
     0.498
SDH89137.1
Diguanylate cyclase/phosphodiesterase.
       0.479
SDH89178.1
Phosphonate transport system substrate-binding protein.
       0.479
SDI70060.1
Riboflavin synthase alpha chain.
   
    0.476
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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