SDI12470.1 protein (Pseudomonas abietaniphila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDI12470.1

Hypothetical protein. (293 aa)

Predicted Functional Partners:

SDI12426.1

0.786

SDH67020.1

0.663

SDH59167.1

0.663

SDI45766.1

0.540

SDH42683.1

0.452

SDI40986.1

0.452

SDI12351.1

0.442

SDI12391.1

0.442

SDG07739.1

0.439

SDH60149.1

0.408

Your Current Organism:

Pseudomonas abietaniphila

NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDG07739.1	SDH42683.1	SAMN05216605_10188	SAMN05216605_106197	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Regulatory protein, luxR family.	0.438
SDG07739.1	SDI12470.1	SAMN05216605_10188	SAMN05216605_110257	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Hypothetical protein.	0.439
SDG07739.1	SDI40986.1	SAMN05216605_10188	SAMN05216605_11346	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Regulatory protein, luxR family.	0.438
SDG07739.1	SDI45766.1	SAMN05216605_10188	SAMN05216605_113179	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Acetyltransferase (GNAT) domain-containing protein.	0.459
SDH42683.1	SDG07739.1	SAMN05216605_106197	SAMN05216605_10188	Regulatory protein, luxR family.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.438
SDH42683.1	SDI12470.1	SAMN05216605_106197	SAMN05216605_110257	Regulatory protein, luxR family.	Hypothetical protein.	0.452
SDH42683.1	SDI45766.1	SAMN05216605_106197	SAMN05216605_113179	Regulatory protein, luxR family.	Acetyltransferase (GNAT) domain-containing protein.	0.914
SDH59167.1	SDI12470.1	SAMN05216605_10795	SAMN05216605_110257	Molecular chaperone IbpA; Belongs to the small heat shock protein (HSP20) family.	Hypothetical protein.	0.663
SDH60149.1	SDI12470.1	SAMN05216605_107122	SAMN05216605_110257	dGTPase.	Hypothetical protein.	0.408
SDH67020.1	SDI12470.1	SAMN05216605_107291	SAMN05216605_110257	Molecular chaperone IbpA; Belongs to the small heat shock protein (HSP20) family.	Hypothetical protein.	0.663
SDI12351.1	SDI12391.1	SAMN05216605_110254	SAMN05216605_110255	JAB domain-containing protein.	ThiF family protein.	0.786
SDI12351.1	SDI12426.1	SAMN05216605_110254	SAMN05216605_110256	JAB domain-containing protein.	Hypothetical protein.	0.442
SDI12351.1	SDI12470.1	SAMN05216605_110254	SAMN05216605_110257	JAB domain-containing protein.	Hypothetical protein.	0.442
SDI12391.1	SDI12351.1	SAMN05216605_110255	SAMN05216605_110254	ThiF family protein.	JAB domain-containing protein.	0.786
SDI12391.1	SDI12426.1	SAMN05216605_110255	SAMN05216605_110256	ThiF family protein.	Hypothetical protein.	0.864
SDI12391.1	SDI12470.1	SAMN05216605_110255	SAMN05216605_110257	ThiF family protein.	Hypothetical protein.	0.442
SDI12426.1	SDI12351.1	SAMN05216605_110256	SAMN05216605_110254	Hypothetical protein.	JAB domain-containing protein.	0.442
SDI12426.1	SDI12391.1	SAMN05216605_110256	SAMN05216605_110255	Hypothetical protein.	ThiF family protein.	0.864
SDI12426.1	SDI12470.1	SAMN05216605_110256	SAMN05216605_110257	Hypothetical protein.	Hypothetical protein.	0.786
SDI12470.1	SDG07739.1	SAMN05216605_110257	SAMN05216605_10188	Hypothetical protein.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.439