Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH29444.1 | SDH89662.1 | SAMN05216605_105331 | SAMN05216605_10920 | Putative negative regulator of RcsB-dependent stress response. | Protein of unknown function. | 0.447 |
SDH29444.1 | SDI04715.1 | SAMN05216605_105331 | SAMN05216605_11057 | Putative negative regulator of RcsB-dependent stress response. | HemY protein. | 0.706 |
SDH29444.1 | SDI04756.1 | SAMN05216605_105331 | SAMN05216605_11058 | Putative negative regulator of RcsB-dependent stress response. | Uroporphyrin-3 C-methyltransferase. | 0.637 |
SDH29444.1 | SDI04792.1 | SAMN05216605_105331 | SAMN05216605_11059 | Putative negative regulator of RcsB-dependent stress response. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.677 |
SDH29444.1 | SDI42942.1 | SAMN05216605_105331 | SAMN05216605_113103 | Putative negative regulator of RcsB-dependent stress response. | TIGR02099 family protein. | 0.589 |
SDH29444.1 | SDJ45820.1 | SAMN05216605_105331 | SAMN05216605_1315 | Putative negative regulator of RcsB-dependent stress response. | Hypothetical protein. | 0.429 |
SDH59887.1 | SDI04756.1 | SAMN05216605_107115 | SAMN05216605_11058 | Glutaredoxin-like domain. | Uroporphyrin-3 C-methyltransferase. | 0.632 |
SDH59887.1 | SDJ45820.1 | SAMN05216605_107115 | SAMN05216605_1315 | Glutaredoxin-like domain. | Hypothetical protein. | 0.423 |
SDH89662.1 | SDH29444.1 | SAMN05216605_10920 | SAMN05216605_105331 | Protein of unknown function. | Putative negative regulator of RcsB-dependent stress response. | 0.447 |
SDH89662.1 | SDI04756.1 | SAMN05216605_10920 | SAMN05216605_11058 | Protein of unknown function. | Uroporphyrin-3 C-methyltransferase. | 0.637 |
SDH89662.1 | SDI42942.1 | SAMN05216605_10920 | SAMN05216605_113103 | Protein of unknown function. | TIGR02099 family protein. | 0.613 |
SDH89662.1 | SDJ45820.1 | SAMN05216605_10920 | SAMN05216605_1315 | Protein of unknown function. | Hypothetical protein. | 0.767 |
SDI04715.1 | SDH29444.1 | SAMN05216605_11057 | SAMN05216605_105331 | HemY protein. | Putative negative regulator of RcsB-dependent stress response. | 0.706 |
SDI04715.1 | SDI04756.1 | SAMN05216605_11057 | SAMN05216605_11058 | HemY protein. | Uroporphyrin-3 C-methyltransferase. | 0.986 |
SDI04715.1 | SDI04792.1 | SAMN05216605_11057 | SAMN05216605_11059 | HemY protein. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.877 |
SDI04715.1 | SDI42942.1 | SAMN05216605_11057 | SAMN05216605_113103 | HemY protein. | TIGR02099 family protein. | 0.428 |
SDI04715.1 | hemC | SAMN05216605_11057 | SAMN05216605_11060 | HemY protein. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.757 |
SDI04756.1 | SDH29444.1 | SAMN05216605_11058 | SAMN05216605_105331 | Uroporphyrin-3 C-methyltransferase. | Putative negative regulator of RcsB-dependent stress response. | 0.637 |
SDI04756.1 | SDH59887.1 | SAMN05216605_11058 | SAMN05216605_107115 | Uroporphyrin-3 C-methyltransferase. | Glutaredoxin-like domain. | 0.632 |
SDI04756.1 | SDH89662.1 | SAMN05216605_11058 | SAMN05216605_10920 | Uroporphyrin-3 C-methyltransferase. | Protein of unknown function. | 0.637 |
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