STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI34018.1Hypothetical protein. (241 aa)    
Predicted Functional Partners:
SDH94296.1
Allophanate hydrolase.
 
  
 0.947
SDI34089.1
NitT/TauT family transport system permease protein.
 
   
 0.944
SDI34050.1
NitT/TauT family transport system ATP-binding protein.
 
     0.943
SDI34120.1
NitT/TauT family transport system substrate-binding protein.
 
     0.929
SDI33936.1
Urea carboxylase.
 
  
 0.925
SDI33983.1
Hypothetical protein.
 
    
0.838
SDH22111.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
 
  
 0.787
SDG76236.1
Glutamate synthase (NADPH) large subunit.
    
  0.758
SDH22139.1
Sensor histidine kinase inhibitor, KipI family.
    
 0.729
SDG28366.1
Hypothetical protein.
 
     0.527
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.