Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG59556.1 | SDH06556.1 | SAMN05216605_102514 | SAMN05216605_104238 | Iron-containing redox enzyme. | Sulfur carrier protein ThiS. | 0.787 |
SDG59556.1 | SDI28572.1 | SAMN05216605_102514 | SAMN05216605_1126 | Iron-containing redox enzyme. | 8-oxo-dGTPase. | 0.840 |
SDG59556.1 | SDI72686.1 | SAMN05216605_102514 | SAMN05216605_116104 | Iron-containing redox enzyme. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.975 |
SDG59556.1 | thiC | SAMN05216605_102514 | SAMN05216605_103192 | Iron-containing redox enzyme. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.904 |
SDG59556.1 | thiG | SAMN05216605_102514 | SAMN05216605_104237 | Iron-containing redox enzyme. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.776 |
SDG59556.1 | thiL | SAMN05216605_102514 | SAMN05216605_11630 | Iron-containing redox enzyme. | Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.783 |
SDH06556.1 | SDG59556.1 | SAMN05216605_104238 | SAMN05216605_102514 | Sulfur carrier protein ThiS. | Iron-containing redox enzyme. | 0.787 |
SDH06556.1 | SDI28572.1 | SAMN05216605_104238 | SAMN05216605_1126 | Sulfur carrier protein ThiS. | 8-oxo-dGTPase. | 0.974 |
SDH06556.1 | SDI72686.1 | SAMN05216605_104238 | SAMN05216605_116104 | Sulfur carrier protein ThiS. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.971 |
SDH06556.1 | thiC | SAMN05216605_104238 | SAMN05216605_103192 | Sulfur carrier protein ThiS. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.910 |
SDH06556.1 | thiG | SAMN05216605_104238 | SAMN05216605_104237 | Sulfur carrier protein ThiS. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.999 |
SDH06556.1 | thiL | SAMN05216605_104238 | SAMN05216605_11630 | Sulfur carrier protein ThiS. | Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.748 |
SDH40997.1 | SDI28572.1 | SAMN05216605_106162 | SAMN05216605_1126 | Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 8-oxo-dGTPase. | 0.833 |
SDH40997.1 | SDI66269.1 | SAMN05216605_106162 | SAMN05216605_115169 | Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.565 |
SDH40997.1 | SDI72686.1 | SAMN05216605_106162 | SAMN05216605_116104 | Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.452 |
SDH40997.1 | ribB | SAMN05216605_106162 | SAMN05216605_11627 | Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.874 |
SDI28529.1 | SDI28572.1 | SAMN05216605_1125 | SAMN05216605_1126 | Glutathione S-transferase. | 8-oxo-dGTPase. | 0.808 |
SDI28572.1 | SDG59556.1 | SAMN05216605_1126 | SAMN05216605_102514 | 8-oxo-dGTPase. | Iron-containing redox enzyme. | 0.840 |
SDI28572.1 | SDH06556.1 | SAMN05216605_1126 | SAMN05216605_104238 | 8-oxo-dGTPase. | Sulfur carrier protein ThiS. | 0.974 |
SDI28572.1 | SDH40997.1 | SAMN05216605_1126 | SAMN05216605_106162 | 8-oxo-dGTPase. | Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.833 |
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