STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI44723.1Hypothetical protein. (265 aa)    
Predicted Functional Partners:
SDI44688.1
PKHD-type hydroxylase.
 
 
 0.940
SDH79548.1
Alginate biosynthesis protein AlgX.
  
 0.855
SDH79437.1
Alginate O-acetyltransferase complex protein AlgJ.
  
 0.807
SDJ07653.1
Hypothetical protein.
  
     0.772
SDJ35995.1
Hypothetical protein.
  
     0.767
SDI72586.1
Hypothetical protein.
  
     0.759
SDG78035.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.749
SDG88861.1
Sel1 repeat-containing protein.
  
     0.661
SDJ24064.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.657
SDI44657.1
Catecholate siderophore receptor.
 
  
 0.653
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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