STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI40186.1HNH endonuclease. (229 aa)    
Predicted Functional Partners:
SDI40236.1
HNH endonuclease.
       0.773
SDI40022.1
Phage major capsid protein, HK97 family.
       0.522
SDI40057.1
Hypothetical protein.
       0.522
SDI40087.1
Phage portal protein, HK97 family.
       0.522
SDI40122.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
       0.522
SDI40157.1
Phage terminase small subunit.
       0.522
SDI40266.1
Hypothetical protein.
       0.517
SDI40307.1
Hypothetical protein.
       0.517
SDI40342.1
Hypothetical protein.
       0.428
SDI39826.1
Protein of unknown function.
       0.418
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.