STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI41096.1Arc-like DNA binding domain-containing protein. (75 aa)    
Predicted Functional Partners:
vapC
tRNA(fMet)-specific endonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
   
 
 0.793
SDI41277.1
Hypothetical protein.
       0.780
SDI41135.1
Carbon storage regulator.
       0.773
SDI41172.1
Hypothetical protein.
       0.773
SDI41207.1
Hypothetical protein.
       0.773
SDI41240.1
Hypothetical protein.
       0.773
SDI41311.1
Serine/threonine protein phosphatase 1.
       0.773
SDI41343.1
Hypothetical protein.
       0.773
SDI41372.1
Transcriptional regulator, AlpA family.
       0.773
SDI41028.1
Tellurite resistance protein TerB.
       0.631
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.