STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lldDL-lactate dehydrogenase (cytochrome); Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain. (381 aa)    
Predicted Functional Partners:
SDI54703.1
D-lactate dehydrogenase.
  
 0.989
SDG64166.1
FAD/FMN-containing dehydrogenase.
  
 0.969
SDI54624.1
Lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.954
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
 0.858
SDH95093.1
Glycolate oxidase.
  
 0.858
SDH67418.1
FAD/FMN-containing dehydrogenase.
 
 0.811
SDH62054.1
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
   
 0.786
SDH62088.1
FAD/FMN-containing dehydrogenase.
  
 0.782
SDH95132.1
Glycolate oxidase FAD binding subunit.
  
 0.782
SDJ03483.1
Glycolate oxidase, subunit GlcD.
  
 0.782
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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