STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI70457.1Vitamin B12 transporter. (627 aa)    
Predicted Functional Partners:
SDI63695.1
Outer membrane transport energization protein TonB.
 
 
 0.976
SDI07612.1
Outer membrane transport energization protein TonB.
 
 
 0.972
SDH23747.1
Cell division and transport-associated protein TolA.
 
 
 0.965
SDH05699.1
Protein TonB.
   
 0.940
SDI03399.1
TonB family C-terminal domain-containing protein.
   
 0.940
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 
 0.849
SDH81594.1
Hemoglobin/transferrin/lactoferrin receptor protein.
 
  
0.745
SDG50751.1
Chromosome partitioning related protein ParA.
  
 
 
 0.733
SDI93899.1
Biopolymer transport protein ExbB.
 
  
 0.733
SDI63852.1
Iron complex outermembrane recepter protein.
 
  
0.703
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.