STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI78532.1Transcriptional regulator, GntR family. (240 aa)    
Predicted Functional Partners:
SDI03809.1
Transcriptional regulator, GntR family.
  
     0.773
SDG26105.1
DNA-binding transcriptional regulator, GntR family.
  
    0.733
SDH39712.1
Transcriptional regulator, GntR family.
  
    0.727
SDG26328.1
Transcriptional regulator, GntR family.
  
    0.720
SDG26951.1
DNA-binding transcriptional regulator, GntR family.
  
    0.671
SDH11777.1
Transcriptional regulator, GntR family.
  
    0.668
SDH98133.1
Transcriptional regulator, GntR family.
  
    0.632
SDH94261.1
Transcriptional regulator, GntR family.
  
    0.612
SDG20600.1
Hypothetical protein.
    
  0.601
SDG54200.1
Hypothetical protein.
    
  0.601
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.