Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG50677.1 | SDI85286.1 | SAMN05216605_102270 | SAMN05216605_11818 | Integrating conjugative element, PFGI_1 class, ParB family protein. | Chromosome segregation ATPase. | 0.699 |
SDG50677.1 | rsmG | SAMN05216605_102270 | SAMN05216605_11819 | Integrating conjugative element, PFGI_1 class, ParB family protein. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.639 |
SDH38938.1 | SDI23182.1 | SAMN05216605_106117 | SAMN05216605_111184 | Protein of unknown function. | DNA translocase FtsK. | 0.846 |
SDH38938.1 | SDI70457.1 | SAMN05216605_106117 | SAMN05216605_11636 | Protein of unknown function. | Vitamin B12 transporter. | 0.687 |
SDH38938.1 | SDI85286.1 | SAMN05216605_106117 | SAMN05216605_11818 | Protein of unknown function. | Chromosome segregation ATPase. | 0.620 |
SDI23182.1 | SDH38938.1 | SAMN05216605_111184 | SAMN05216605_106117 | DNA translocase FtsK. | Protein of unknown function. | 0.846 |
SDI23182.1 | SDI85254.1 | SAMN05216605_111184 | SAMN05216605_11817 | DNA translocase FtsK. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.796 |
SDI23182.1 | SDI85286.1 | SAMN05216605_111184 | SAMN05216605_11818 | DNA translocase FtsK. | Chromosome segregation ATPase. | 0.721 |
SDI23182.1 | SDJ21373.1 | SAMN05216605_111184 | SAMN05216605_12381 | DNA translocase FtsK. | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | 0.793 |
SDI23182.1 | dnaA | SAMN05216605_111184 | SAMN05216605_11825 | DNA translocase FtsK. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.694 |
SDI70457.1 | SDH38938.1 | SAMN05216605_11636 | SAMN05216605_106117 | Vitamin B12 transporter. | Protein of unknown function. | 0.687 |
SDI70457.1 | SDI85286.1 | SAMN05216605_11636 | SAMN05216605_11818 | Vitamin B12 transporter. | Chromosome segregation ATPase. | 0.692 |
SDI85254.1 | SDI23182.1 | SAMN05216605_11817 | SAMN05216605_111184 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | DNA translocase FtsK. | 0.796 |
SDI85254.1 | SDI85286.1 | SAMN05216605_11817 | SAMN05216605_11818 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Chromosome segregation ATPase. | 0.985 |
SDI85254.1 | dnaA | SAMN05216605_11817 | SAMN05216605_11825 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.651 |
SDI85254.1 | mnmG | SAMN05216605_11817 | SAMN05216605_11820 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | tRNA uridine 5-carboxymethylaminomethyl modification enzyme; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.779 |
SDI85254.1 | rsmG | SAMN05216605_11817 | SAMN05216605_11819 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.903 |
SDI85286.1 | SDG50677.1 | SAMN05216605_11818 | SAMN05216605_102270 | Chromosome segregation ATPase. | Integrating conjugative element, PFGI_1 class, ParB family protein. | 0.699 |
SDI85286.1 | SDH38938.1 | SAMN05216605_11818 | SAMN05216605_106117 | Chromosome segregation ATPase. | Protein of unknown function. | 0.620 |
SDI85286.1 | SDI23182.1 | SAMN05216605_11818 | SAMN05216605_111184 | Chromosome segregation ATPase. | DNA translocase FtsK. | 0.721 |
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