STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI86052.1Tetratricopeptide repeat-containing protein. (103 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.781
SDI86100.1
Trk system potassium uptake protein TrkA.
       0.781
SDH59451.1
Periplasmic sensor diguanylate cyclase/phosphodiesterase.
     
 0.737
SDI86012.1
Hypothetical protein.
       0.714
SDH25304.1
Lipoprotein NlpD.
   
 
 0.709
SDH63612.1
TPR repeat-containing protein.
    
 0.695
SDJ02241.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
   
 
 0.687
SDI61951.1
Signal transduction histidine kinase.
    
 0.675
SDG15346.1
PAS/PAC sensor hybrid histidine kinase.
    
 0.621
SDG21202.1
Hypothetical protein.
  
     0.621
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.