STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI95800.1Nitrile hydratase. (221 aa)    
Predicted Functional Partners:
SDI95834.1
Nitrile hydratase.
 
 
 0.999
SDI95764.1
Nitrile hydratase beta subunit.
 
  
  0.984
SDH68576.1
Amidase.
    
  0.690
SDG14635.1
aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.
    
  0.636
SDG18649.1
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit.
    
  0.636
SDH43575.1
ABC-type phosphate/phosphonate transport system, substrate-binding protein.
  
     0.629
SDG19509.1
Nitrilase.
     
 0.607
SDH58372.1
Aliphatic nitrilase.
     
 0.607
SDH63268.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
  0.585
SDI92256.1
Uncharacterized domain 1-containing protein.
 
     0.568
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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