STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ01093.1Sugar phosphate permease. (445 aa)    
Predicted Functional Partners:
SDH40247.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
  
  
 0.511
SDJ01059.1
hydroxymethylglutaryl-CoA lyase.
       0.466
SDH90897.1
MFS transporter, ACS family, glucarate transporter.
  
     0.461
SDH94538.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
     
 0.456
SDJ01029.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
       0.444
SDH67986.1
MFS transporter, FHS family, L-fucose permease.
   
    0.430
SDH96939.1
MFS transporter, FHS family, L-fucose permease.
   
    0.430
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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