STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ21777.1Cobaltochelatase CobS. (352 aa)    
Predicted Functional Partners:
SDH39334.1
Multi-sensor hybrid histidine kinase.
   
 
  0.815
SDI64784.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
   
    0.735
SDH05477.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
   
 
  0.733
SDH27940.1
Two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE.
   
 
  0.733
SDI42119.1
Two-component system, chemotaxis family, response regulator CheV.
   
 
  0.728
SDJ23939.1
CheW protein.
   
 
  0.728
SDJ21736.1
Protein of unknown function.
 
     0.687
SDI61951.1
Signal transduction histidine kinase.
   
 
  0.681
SDJ25391.1
Hpt domain-containing protein.
   
 
  0.668
SDG15346.1
PAS/PAC sensor hybrid histidine kinase.
   
 
  0.625
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.