STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ36196.1Hypothetical protein. (314 aa)    
Predicted Functional Partners:
SDJ36158.1
Chromate transporter.
 
   
 0.931
SDH93139.1
Chromate transporter.
 
   
 0.703
SDJ36112.1
Hypothetical protein.
 
    
0.702
SDG74610.1
Protein of unknown function.
  
     0.529
SDI59833.1
Citrate/tricarballylate utilization protein.
  
  
  0.520
SDJ07757.1
Mercuric ion transport protein.
  
  
  0.465
SDJ07329.1
Mercuric ion transport protein.
  
  
  0.463
SDJ11778.1
Hypothetical protein.
  
     0.462
SDI12426.1
Hypothetical protein.
  
     0.458
SDG49897.1
Mercuric ion transport protein.
  
  
  0.454
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.