STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP56344.1Two component transcriptional regulator, LuxR family. (213 aa)    
Predicted Functional Partners:
SEP56330.1
Two-component system, NarL family, sensor histidine kinase LiaS.
 0.994
SEQ49400.1
Signal transduction histidine kinase.
 0.975
SEQ40573.1
Signal transduction histidine kinase.
 
 0.931
SEP93946.1
Two-component system, NarL family, sensor histidine kinase DesK.
 
 0.920
SEP56311.1
Predicted membrane protein.
 
  
 0.915
SEP95905.1
Sugar or nucleoside kinase, ribokinase family.
  
 0.801
SEP56362.1
Uncharacterized protein YneR.
       0.737
SEP82472.1
Amino acid ABC transporter substrate-binding protein, PAAT family /amino acid ABC transporter membrane protein, PAAT family.
   
 0.602
SEQ27870.1
Putative lysine transport system permease protein.
   
 0.602
SEP80894.1
Signal transduction histidine kinase.
  
 0.567
Your Current Organism:
Ignavigranum ruoffiae
NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.