SEP57819.1 protein (Ignavigranum ruoffiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEP57819.1

Peptide/nickel transport system substrate-binding protein. (592 aa)

Predicted Functional Partners:

SEP57655.1

0.972

SEP57796.1

0.960

SEP57609.1

0.947

SEP57844.1

0.938

SEP57634.1

0.937

SEQ04025.1

0.810

SEP83941.1

0.715

SEQ04061.1

0.715

SEP83969.1

0.659

SEQ04092.1

0.604

Your Current Organism:

Ignavigranum ruoffiae

NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEP57609.1	SEP57634.1	SAMN04488558_10193	SAMN04488558_10194	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.987
SEP57609.1	SEP57655.1	SAMN04488558_10193	SAMN04488558_10195	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.990
SEP57609.1	SEP57796.1	SAMN04488558_10193	SAMN04488558_10196	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.999
SEP57609.1	SEP57819.1	SAMN04488558_10193	SAMN04488558_10197	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.947
SEP57609.1	SEP57844.1	SAMN04488558_10193	SAMN04488558_10198	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.932
SEP57609.1	SEP83941.1	SAMN04488558_10193	SAMN04488558_102167	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.993
SEP57609.1	SEP83969.1	SAMN04488558_10193	SAMN04488558_102168	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.961
SEP57609.1	SEQ04025.1	SAMN04488558_10193	SAMN04488558_104128	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein.	0.919
SEP57609.1	SEQ04061.1	SAMN04488558_10193	SAMN04488558_104129	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein.	0.989
SEP57634.1	SEP57609.1	SAMN04488558_10194	SAMN04488558_10193	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.987
SEP57634.1	SEP57655.1	SAMN04488558_10194	SAMN04488558_10195	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.987
SEP57634.1	SEP57796.1	SAMN04488558_10194	SAMN04488558_10196	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.999
SEP57634.1	SEP57819.1	SAMN04488558_10194	SAMN04488558_10197	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.937
SEP57634.1	SEP57844.1	SAMN04488558_10194	SAMN04488558_10198	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.920
SEP57634.1	SEP83941.1	SAMN04488558_10194	SAMN04488558_102167	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.987
SEP57634.1	SEP83969.1	SAMN04488558_10194	SAMN04488558_102168	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.904
SEP57634.1	SEQ04025.1	SAMN04488558_10194	SAMN04488558_104128	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein.	0.858
SEP57634.1	SEQ04061.1	SAMN04488558_10194	SAMN04488558_104129	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein.	0.977
SEP57634.1	SEQ04092.1	SAMN04488558_10194	SAMN04488558_104130	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.844
SEP57655.1	SEP57609.1	SAMN04488558_10195	SAMN04488558_10193	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.990