STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fumCFumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (454 aa)    
Predicted Functional Partners:
SEQ03450.1
Fumarate reductase flavoprotein subunit.
  
 0.991
SEP79226.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
  
 
 0.950
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
  
 0.884
SEQ25470.1
FAD binding domain-containing protein.
  
 0.844
SEQ25503.1
FAD binding domain-containing protein.
  
 0.844
SEP79450.1
Aspartate ammonia-lyase.
 
 
 
0.775
SEQ50972.1
Phosphate acetyltransferase.
  
 
 0.730
SEP84670.1
Adenylosuccinate lyase.
   
 0.721
atpA-2
ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 
 0.706
SEP62905.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
   
 0.680
Your Current Organism:
Ignavigranum ruoffiae
NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae
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