STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (676 aa)    
Predicted Functional Partners:
hutI
Imidazolonepropionase.
 
 0.998
hutH
Histidine ammonia-lyase.
 
 0.997
SEQ03450.1
Fumarate reductase flavoprotein subunit.
    
 0.954
SEP90344.1
HutD protein.
 
  
 0.809
hutG
Formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
 
  
 0.668
SEP90543.1
DNA-binding transcriptional activator of the SARP family.
 
     0.631
SEP90572.1
Conserved hypothetical protein.
 
     0.606
SEQ25470.1
FAD binding domain-containing protein.
     
 0.499
SEQ25503.1
FAD binding domain-containing protein.
     
 0.499
SEP90505.1
Glutamate formiminotransferase.
 
    0.441
Your Current Organism:
Ignavigranum ruoffiae
NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae
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