STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemLGlutamate-1-semialdehyde 2,1-aminomutase. (434 aa)    
Predicted Functional Partners:
SEP99859.1
Uroporphyrinogen III methyltransferase / synthase.
 
 
 0.994
SEQ00224.1
Porphobilinogen synthase; Belongs to the ALAD family.
 
 
 0.990
hemA
Hydroxymethylbilane synthase/glutamyl-tRNA reductase,TIGR01035; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 0.987
SEQ00124.1
Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
 
  
 0.925
SEQ10037.1
Long-chain acyl-CoA synthetase.
 
 
 0.915
SEQ00019.1
Precorrin-2/cobalt-factor-2 C20-methyltransferase.
    
 0.879
SEQ00187.1
Uroporphyrinogen-III synthase.
  
 
 0.878
SEQ00614.1
L-threonine O-3-phosphate decarboxylase.
 
   
 0.835
SEQ00517.1
Hypothetical protein.
       0.802
SEP99719.1
Cobalt-precorrin 4 C11-methyltransferase.
 
   
 0.791
Your Current Organism:
Ignavigranum ruoffiae
NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae
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